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# RESEARCH FLYER — example: mid-term progress report
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#   Page 1  = highlight summary (INTRODUCTION / RATIONALE / RESULTS / CONCLUSION
#             + one full-width figure pinned to the foot of the page)
#   Page 2+ = detailed two-column article (abstract, sections, figures,
#             tables, equations, references, end matter)
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# ⚠ EXAMPLE CONTENT: the numbers, milestones and figures below are
#   illustrative placeholders to demonstrate the template — replace them
#   with real results before sharing.
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# Editing cheatsheet
#   • Markdown + inline HTML everywhere: **bold**, *italic*, <sub>2</sub>, <sup>3</sup>.
#   • Citations: [[3]] -> (3), [[1-4]] -> (1–4), [[5, 11-29]] -> (5, 11–29);
#     numbers refer to `article.references` (1-based) and become links.
#   • Inline maths: $E_g = 1.2$ eV  (LaTeX -> MathML; needs latex2mathml).
#   • Section blocks (article.sections[].blocks) — a bare string is a paragraph, or:
#       {type: p, text, noindent}          paragraph
#       {type: h3, text}                   sub-heading
#       {type: list, numbered, items}      numbered / bulleted list
#       {type: equation, tex, number}      display equation
#       {type: figure, src, label, title, caption, span: full|column, width}
#       {type: table, label, caption, header, rows, note, span: full|column}
#       {type: callout, title, text}       tinted box
#       {type: html, html}                 raw HTML escape hatch
#   • Figures: SVG (inlined) or PNG/JPG (embedded) — paths relative to this folder.
#   • Build:  python build.py mid_report      (from Research-Flyer/)
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output: Yuefeng_Yin_Mid_Report          # -> build/<output>.html / .pdf

# Optional colour overrides (defaults = RTS blue theme in templates/flyer.css)
# theme:
#   accent: "#1a5faa"
#   accent_dark: "#0f3f73"

meta:
  venue: "Reconfigurable Quantum Materials Group, Monash University"      # footer "journal" name
  date: "29 September 2026"              # footer date (printed in capitals)
  running_head: "AEA Ignite Progress Report"        # header on detailed pages
  summary_tag: "AEA Ignite Progress Report" # blue tag on page 1
  summary_page_label: "Summary"          # footer page label on page 1
  side_note: "Prepared by Y. Yin · Department of Materials Science and Engineering, Monash University · 29 September 2026"

subject: "Quantum Materials"            # coloured kicker above the title
title: "Interface-first design of low-energy quantum devices"

authors:
  - {name: "Yuefeng Yin", affil: [1, 2], corresponding: true, email: "yuefeng.yin@monash.edu"}
  - {name: "Co-Investigator A", affil: [1]}
  - {name: "Co-Investigator B", affil: [2]}
  - {name: "PhD Candidate C", affil: [1]}
  - {name: "Industry Partner D", affil: [3]}

affiliations:
  1: "Department of Materials Science and Engineering, Monash University, Clayton, VIC 3800, Australia"
  2: "School of Physics and Astronomy, Monash University, Clayton, VIC 3800, Australia"
  3: "Industry partner, Melbourne, VIC, Australia"

link:
  label: "Full report, data and list of author affiliations:"
  url: "https://yyfforce.github.io"
  display: "yyfforce.github.io"

badge: figures/logo.png              # optional art above the link (SVG/PNG); delete to hide

cite_as: "Y. Yin *et al.*, Mid-term report, Monash University (2026)."

# ═════════════════════════ PAGE 1 — HIGHLIGHT SUMMARY ═════════════════════════
summary:
  authors_shown: 3                       # "A, B, C, et al."
  sections:
    - head: Introduction
      text: >
        Low-energy electronics — topological transistors, spin–orbit logic and negative-capacitance
        devices — are built by stacking dissimilar two-dimensional (2D) and thin-film materials.
        Whether a device concept survives depends less on the isolated material than on its
        interfaces: band alignment, orbital hybridisation, strain and disorder decide what
        actually reaches a working stack.
    - head: Rationale
      text: >
        Interface screening has so far been done one "hero" calculation at a time. We built
        **InterfaceHandler (InHand)**, an open-source package that automates lattice-matched
        supercell construction for arbitrary pairs of crystals, and coupled it to a
        high-throughput density-functional theory (DFT) workflow. The program targets three
        material families with established bulk physics — Heusler ferromagnetic films,
        2D bismuth allotropes and topological pyrite-type OsX<sub>2</sub> — and asks which
        interfaces keep their useful properties once contacted.
    - head: Results
      text: >
        At the mid-point, InHand has generated 4,812 candidate interfaces across the three
        families, of which 1,241 show type-I or type-II band alignment and 292 have been
        converged with plane-wave DFT. Five of eleven milestones are complete and two more are
        in progress. Heusler films retain their large Berry curvature in 71% of converged
        stacks, and a first labelled dataset has been curated for the machine-learning
        surrogate that will replace most brute-force calculations in the second half.
    - head: Conclusion
      text: >
        An interface-first workflow turns device-stack selection from a case-by-case effort into
        a searchable design space. The remaining twelve months focus on the pyrite family,
        a first surrogate model and handing the best stacks to our industry partner for
        fabrication.
  figure:
    src: figures/fig_summary.svg
    title: "Workflow of the interface screening program."
    caption: >
      Candidate crystals from public structure databases are paired and lattice-matched by InHand
      to build an interface library, which is screened with DFT and classified by material family,
      band alignment and tolerance to disorder. Donuts show progress at the mid-term point
      (illustrative values).

# ═════════════════════════ PAGES 2+ — DETAILED ARTICLE ═════════════════════════
article:
  abstract: >
    Heterostructure interfaces decide whether a promising quantum material becomes a working
    low-energy device, yet they are rarely screened systematically. This mid-term report
    describes an interface-first program built around InterfaceHandler (InHand), an open-source
    tool that constructs lattice-matched supercells and feeds them to high-throughput
    first-principles calculations. We summarise progress across three material families,
    report the screening statistics to date, and set out the plan, risks and deliverables for
    the second half of the project.

  sections:
    - heading: null                      # opening section has no heading, like a journal article
      blocks:
        - >
          Two-dimensional materials and ultrathin films have opened a route to electronics that
          dissipates far less energy than silicon [[1-3]]. Topological edge channels, large Berry
          curvature and spin–momentum locking all promise low-dissipation transport, but every one
          of these properties is defined for an idealised, isolated crystal [[4, 5]]. A real device
          places that crystal against a substrate, a gate dielectric and metallic contacts.
        - >
          The physics at those contacts — charge transfer, hybridisation, strain and interfacial
          disorder — can switch a topological state off, pin the Fermi level or wash out the very
          signal a device relies on. Predicting it requires calculations on the interface itself,
          and the number of plausible interfaces grows combinatorially with the number of
          candidate materials, orientations and terminations.
        - >
          This project replaces the "one hero calculation" approach with a systematic search. Its
          three streams are (i) software to generate interfaces automatically, (ii) high-throughput
          screening of three material families with density-functional theory (DFT), and
          (iii) machine-learning surrogates trained on the resulting data to extend the search at
          a fraction of the cost.

    - heading: Interface construction with InHand
      blocks:
        - >
          Given two bulk or 2D crystals, InHand enumerates supercells of each whose in-plane
          lattices coincide within a strain tolerance. For lattice vectors
          $\mathbf{a}_{1,2}$ (substrate) and $\mathbf{b}_{1,2}$ (overlayer), a match exists when
          integer matrices $M$ and $N$ satisfy
        - type: equation
          tex: 'M\begin{pmatrix}\mathbf{a}_1\\ \mathbf{a}_2\end{pmatrix} \approx R(\theta)\,N\begin{pmatrix}\mathbf{b}_1\\ \mathbf{b}_2\end{pmatrix},\qquad |\varepsilon| < \varepsilon_{\max}'
          number: 1
        - type: p
          noindent: true
          text: >
            where $R(\theta)$ is an in-plane rotation and $\varepsilon$ the residual strain applied to
            the overlayer. Candidate cells are ranked by strain, area and number of atoms so that the
            smallest physically faithful supercell is passed to DFT (Fig. 1).
        - type: figure
          src: figures/fig_matching.svg
          label: "Fig. 1"
          title: "Coincidence-lattice matching."
          caption: >
            A square substrate (blue) and a rotated hexagonal overlayer (orange) share a
            √5 × √5 supercell spanned by **A**<sub>1</sub> and **A**<sub>2</sub>. InHand scores each
            candidate by residual strain, twist angle and cell size.
        - >
          Version 2.1 of InHand completes Phase 1 of the software plan: structure import from
          public databases, the √n supercell search and automatic termination handling. Phase 2
          adds a stable Python API for workflow engines and is on track for month 16.

    - heading: Screening progress
      blocks:
        - >
          All generated interfaces pass through the same three-stage screen: a fast band-alignment
          estimate from vacuum-aligned band edges, a relaxed low-precision DFT calculation, and a
          converged calculation with spin–orbit coupling for the survivors. Figure 2 shows the
          size of each stage per family.
        - type: figure
          src: figures/fig_funnel.svg
          label: "Fig. 2"
          title: "Screening funnel by material family."
          caption: >
            Interfaces generated by InHand, those with type-I or type-II band alignment, and those
            converged with full DFT at the mid-term point (illustrative values).
        - type: h3
          text: "Heusler ferromagnetic films"
        - >
          Co<sub>2</sub>MnGa-type films were previously shown to retain a large Berry curvature
          even when fully disordered [[6]]. Within the converged set, 71% of film/substrate
          stacks keep an anomalous Hall conductivity within 20% of the free-standing value; the
          failures cluster on substrates with strong Mn–O bonding.
        - type: h3
          text: "2D bismuth allotropes"
        - >
          For bismuthene, the question is whether the topological edge state survives a realistic
          contact [[7]]. Screening is 70% complete; early results favour van der Waals contacts
          with large work functions, which preserve the band inversion.
        - type: callout
          title: "Key result so far"
          text: >
            Disorder tolerance, not lattice mismatch, is the main filter: most interfaces that
            fail do so because interfacial disorder closes the gap or quenches the Berry curvature.

    - heading: Timeline and milestones
      blocks:
        - >
          The project runs for 24 months across three research streams and a translation
          activity. Figure 3 and Table 1 give the status of each milestone at month 12.
        - type: figure
          span: full
          src: figures/fig_timeline.svg
          label: "Fig. 3"
          title: "Milestone timeline."
          caption: >
            Filled bars are complete (blue) or in progress (orange, filled to the fraction done);
            open bars are planned. The dashed line marks this report.
        - type: table
          label: "Table 1"
          caption: "Milestone status at the mid-term point."
          header: ["Stream", "Milestone", "Due", "Status"]
          rows:
            - ["Software", "InHand Phase-1 release", "M6", "**Complete**"]
            - ["Software", "√n supercell search", "M9", "**Complete**"]
            - ["Software", "Phase-2 Python API", "M16", "In progress (55%)"]
            - ["Screening", "Heusler films", "M10", "**Complete**"]
            - ["Screening", "Bi allotropes", "M14", "In progress (70%)"]
            - ["Screening", "Pyrite OsX<sub>2</sub>", "M19", "Planned"]
            - ["ML", "Dataset curation", "M13", "**Complete**"]
            - ["ML", "Surrogate model v1", "M21", "Planned"]
            - ["ML", "Active-learning loop", "M24", "Planned"]
            - ["Translation", "Industry workshop", "M7", "**Complete**"]
            - ["Translation", "Device-stack handoff", "M24", "Planned"]
          note: "M = project month. Illustrative example."

    - heading: Risks and plan for the second half
      blocks:
        - type: list
          numbered: true
          items:
            - "**Compute budget.** Converged spin–orbit calculations dominate cost; the surrogate model is designed to cut the number needed by roughly an order of magnitude."
            - "**Pyrite family.** OsX<sub>2</sub> surfaces have several competing terminations; InHand's termination handling will be benchmarked on a small set first."
            - "**Validation.** The top-ranked stacks will be shared with experimental collaborators and our industry partner for growth and transport tests."
        - >
          The second half shifts effort from building tools to using them, ending in a ranked
          shortlist of device stacks.

    - heading: Methods
      blocks:
        - >
          Interfaces were generated with InHand v2.1 using a strain tolerance of 2% and a maximum
          of 120 atoms per cell. Electronic structures were computed with the Vienna *ab initio*
          simulation package [[8]] using the projector augmented-wave method [[9]] and the PBE
          functional; converged calculations include spin–orbit coupling and van der Waals
          corrections. Band alignments were estimated from vacuum-aligned band edges. Calculations
          ran on NCI Gadi.

  references:
    - "K. S. Novoselov *et al.*, 2D materials and van der Waals heterostructures. *Science* **353**, aac9439 (2016)."
    - "A. K. Geim, I. V. Grigorieva, Van der Waals heterostructures. *Nature* **499**, 419–425 (2013)."
    - "Reference placeholder — low-energy electronics review."
    - "M. Z. Hasan, C. L. Kane, Colloquium: Topological insulators. *Rev. Mod. Phys.* **82**, 3045 (2010)."
    - "Reference placeholder — Berry curvature and anomalous transport."
    - "Reference placeholder — disorder-robust Berry curvature in Heusler films."
    - "Reference placeholder — edge states in 2D bismuth allotropes."
    - "G. Kresse, J. Furthmüller, Efficient iterative schemes for *ab initio* total-energy calculations using a plane-wave basis set. *Phys. Rev. B* **54**, 11169 (1996)."
    - "P. E. Blöchl, Projector augmented-wave method. *Phys. Rev. B* **50**, 17953 (1994)."

  acknowledgments:
    - label: Funding
      text: "Replace with funding sources, e.g. grant schemes and project numbers."
    - label: Computing
      text: "Computational resources were provided by the National Computational Infrastructure (NCI) under an NCMAS allocation."
    - label: Author contributions
      text: "Y.Y. conceived the project, developed InHand and wrote the report."
    - label: Competing interests
      text: "The authors declare no competing interests."
    - label: Data and code availability
      text: "InHand is open source; screening data will be released with the final report."

  supplementary:
    heading: "Supplementary Materials"
    text: "Full interface library, screening tables and convergence tests are available on request."

  dates: "Report period: Oct 2025 – Sep 2026"
